Fact Sheet FS1124
Disease Management
Vegetable diseases can severely limit productivity of the garden. Some vegetable diseases can be serious problems every year, while others may rarely appear in the garden. Soil-borne diseases such as Fusarium, Phythium, Rhizoctonia and Phytophthora can survive in soils for many years, and once established can be very difficult to get rid of. Therefore, proper crop rotation is very important for controlling soil-borne diseases in the home garden. Other diseases, such as powdery mildews, are wind-borne (aerial) and can cause problems anywhere your garden is located. In both cases, whether the disease is soil- or wind-borne, good cultural practices and prevention are critically important for maintaining a healthy garden.
Frequent monitoring of the garden to detect problems at an early stage and good cultural practices will allow you to prevent or reduce disease development. However, for effective monitoring, the homeowner must know where and when to look for vegetable diseases and be able to identify those that are found. Rutgers Cooperative Extension offers fact sheet FS547, Diagnosing and Controlling Fungal Diseases of Tomato in the Home Garden, with information about important diseases of tomatoes in the home garden. Remember, without proper identification, disease management is impossible.
Keys to Effective Management
- Rotate the entire garden to a new location as often as possible. This is especially important for reducing the chances for soil-borne diseases to develop. If the same location is used for more than one season, rotate the crops within the garden by plant family. Garden rotation is highly effective in reducing soil-borne disease problems.
- Plow or turn the soil well in advance of planting. The garden should be well plowed and free of weeds, grass, etc., at least 30 days before planting.
- Buy seed or vegetable transplants with known resistance to common diseases. In many cases, catalogs or tags will list pathogens that plants are resistant to. Transplants should be purchased from a reputable dealer and should be free of disease and insect pests at the time of planting.
- Follow recommended plant spacings and practice good weed control to maximize air movement through the garden to encourage rapid leaf drying. Use proper fertility and watering programs to maintain plant health and vigor.
- If possible, use a soaker hose or hand water at the base of plants. Never run your sprinkler in the late afternoon or evening! Long hours of leaf wetness results in ideal conditions for disease development. If you need to water with a sprinkler, do so in the morning or early afternoon so leaves have enough time to dry out before sunset.
- Learn to identify common garden diseases, know when and under what conditions they are likely to occur, and consider chemicals only when a disease problem exists. Seek alternatives to chemicals when possible.
- Thoroughly inspect plants at regular and frequent intervals to monitor any potential disease development. It is suggested to scout the garden at least twice a week. Inspect plants carefully from top to bottom, including both upper and lower leaf surfaces.
- Harvest fruit, seed, pods, etc., as soon as they are ripe. Allowing overripe fruit to remain on the plants often invites additional pest problems.
- Once a plant is no longer productive, destroy it or plow it under or remove it from the garden. Avoid pulling infected plants up and leaving them in the garden area. Infected and/or dead plants left in the garden will only act to harbor the pathogen and potentially cause more disease to develop.
- It is recommended that you do not use infested vegetable plants in any form to add to a mulch bed or compost bin. Vegetable plant matter can harbor insects, disease organisms and nematodes that can easily survive organic decomposition and cause future problems, especially if not composted properly.
| Crop | Disease | Fungicide1 | Notes |
|---|---|---|---|
| Asparagus | Rust | Mancozeb | Plant rust resistant varieties. |
| Purple spot | Chlorothalonil | Cut back and remove ferns after first frost. | |
| Phytophthora crown and spear rot | Start a new planting. Move to other area of garden. | ||
| Beans | Anthracnose (Lima Beans only) | Chlorothalonil | For use only on beans to be harvested dry with pods removed. |
| Bacterial blights | Copper* | Use certified western-grown seed. | |
| Botrytis blight (Gray mold) | Chlorothalonil | Apply after extended wet periods. | |
| Downy mildew (Lima beans only) | Chlorothalonil | For use only on beans to be harvested dry with pods removed. | |
| Powdery mildew | Sulfur* | Sulfur may injure blossoms and some varieties of beans. | |
| Rust | Chlorothalonil, Sulfur* | Sulfur may injure blossoms and some varieties of beans. | |
| Seed Rot and Damping Off | Captan | Mix thoroughly in paper bag or glass jar. | |
|
Viruses |
No chemical registered | Clover control around edge of garden areas is important to reduce spread of virus from clover to beans. Some bean varieties are resistant. Aluminum foil mulch may prevent aphid feeding. | |
| Beets | Cercospora - Leaf spot | Copper* | Apply fungicide preventively. |
| Seed rot and Damping-off | Captan | Mix thoroughly in paper bag or glass jar. | |
| Cole Crops | Black leg | Copper* | Buy disease-free transplants. |
| Black rot | Copper* | Use resistant varieties for black rot control. | |
| Downy mildew | Chlorothalonil | Apply fungicide preventively. | |
| Alternarialeaf spot | Chlorothalonil, Copper* | Do not spray copper when plants are stressed. | |
| Seed rot and Damping-off | Captan | Mix thoroughly in paper bag or glass jar. | |
| Carrots | Leaf blights - Cercospora, Alternaria | Chlorothalonil | Apply fungicides preventively before symptoms appear. Promote good air circulation and keep foliage dry. |
| Bacterial blight | Copper* | ||
| Powdery mildew | Chlorothalonil | ||
| Celery | Bacterial blight | Copper* | Apply fungicides preventively before symptoms appear. Promote good air circulation and keep stalks dry. |
| Leaf spots - Cercospora, Early blight | Chlorothalonil, Copper* | ||
| Septoria blight or Stalk rot (Rhizoctonia) | Chlorothalonil | ||
| Cucurbits (Cucumbers, Summer Squash, Cantalopes, Pumpkins) | Alternaria leaf spot, Anthracnose, Down mildew, Gummy stem blight | Chlorothalonil, Mancozeb, Copper* | Avoid using sprinkler. Follow good crop rotation to help reduce chances for gummy stem blight and anthracnose. |
| Angular leaf spot (cucumbers only) | Copper* | Copper may injure some young plants. | |
| Belly rot (Rhizoctonia) suppression only | Chlorothonil | Use mulch to keep fruit off soil surface. | |
| Powdery mildew | Sulfur* (Pumpkins only), Chlorothonil, Potassium Bicarbonate* | ||
| Seed rot and Damping-off (Melons and Squash) | Captan | Mix thoroughly in paper bag or glass jar. | |
| Potatoes | Early blight, Botrytis vine rot | Chlorothalonil, Mancozeb | Plant early blight resistance varieties. |
| Late blight | chlorothalonil, mancozeb | Plant late blight resistant varieties. Apply fungicides preventively. | |
| Onion | Bacterial soft rot | Copper* | Apply fungicides preventively before symptoms appear. Promote good air circulation and keep stalks dry. |
| Onion (Dry Bulb) | Botrytis leaf blight, Downy mildew, Purple blotch | Chlorothalonil | Apply fungicides preventively before symptoms appear. Promote good air circulation and keep stalks dry. |
| Onion (Green Bunching) and Leeks, Shallots | Botrytis leaf blight, Downy mildew, Purple blotch | Chlorothalonil, Copper* | |
| Peas | Powdery mildew | Copper*, Neem Oil* | Apply copper, neem oil preventively. |
| Bacterial blight | |||
| Seed rot and Damping-off | Captan | Mix thoroughly in paper bag or glass jar. | |
| Peppers | Anthracnose fruit rot | Chlorothalonil, mancozeb | Remove infected fruit from garden. |
| Bacterial leaf spot | Copper* | Plant varieties with resistance to BLS 1-5. | |
| Phytophthora crown and fruit rot | No chemical registered | Avoid planting in low-lying areas. Grow resistant cultivars such as ‘Paladin’ or ‘Aristotle’. | |
| Sweet Corn | Bacterial wilt | No chemical registered | Plant resistant varieties. |
| Leaf blights, Rust | Chlorothalonil, Mancozeb | Plant resistant varieties. | |
| Tomatoes | Early Blight, Septoria leaf spot, Botrytis (Gray mold), Anthracnose fruit rot | Chlorothalonil, Mancozeb, Copper* | See FS547. Follow good crop rotations. |
| Bacterial spot and speck | Copper* | Avoid working in garden when leaves are wet. Avoid sprinkler irrigation. | |
| Late blight | Chlorothalonil, Mancozeb, Copper* | Few varieties with resistance. | |
| Fusariumwilt and Verticilliumwilt | Plant resistant varieties. | ||
| Southern blight | Follow good crop rotations. Pathogens can survive in soil for many years. | ||
| Watermelon | Anthracnose, Alternaria leaf blight, Downy mildew, gummy stem blight | Chlorothalonil, Mancozeb, Copper*, Neem Oil* (Powdery Mildew) | Apply after extended wet periods and/or preventively. Apply weekly to protect new growth. |
* Some formulations of these products may be considered organic, be sure to check the label.
1. Active ingredients, not product names, are listed. Pesticide products and formulations may change. Always follow label instructions. Check label for personal protective equipment, number of applications allowed per season, interval between sprays, and the number of days between last spray and harvest.
Mention or display of a trademark, proprietary product, or firm in text or figures does not constitute an endorsement by Rutgers Cooperative Extension and does not imply approval to the exclusion of other suitable products or firms.
March 2026
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